Path-based Reasoning for Biomedical Knowledge Graphs with BioKGC

Yue Hu, Svitlana Oleshko, Samuele Firmani, Zhaocheng Zhu, Hui Cheng, Maria Ulmer, Matthias Arnold, Maria Colomé-Tatché, Jian Tang, Sophie Xhonneux, Annalisa Marsico
bioRxiv 2024   Paper

Towards Foundation Models for Molecular Learning on Large-Scale Multi-Task Datasets

Dominique Beaini, et al. (34 authors)
ICLR 2024   Paper / Code

Towards Foundation Models for Knowledge Graph Reasoning

Mikhail Galkin, Xinyu Yuan, Hesham Mostafa, Jian Tang, Zhaocheng Zhu
ICLR 2024   Paper / Code

GraphAny: A Foundation Model for Node Classification on Any Graph

Jianan Zhao, Hesham Mostafa, Mikhail Galkin, Michael Bronstein, Zhaocheng Zhu, Jian Tang
arXiv 2024   Paper / Code

A Foundation Model for Zero-shot Logical Query Reasoning

Mikhail Galkin, Jincheng Zhou, Bruno Ribeiro, Jian Tang, Zhaocheng Zhu
NeurIPS 2024   Paper / Code

A*Net: A Scalable Path-based Reasoning Approach for Knowledge Graphs

Zhaocheng Zhu*, Xinyu Yuan*, Mikhail Galkin, Sophie Xhonneux, Ming Zhang, Maxime Gazeau, Jian Tang
NeurIPS 2023   Paper / Code

GraphText: Graph Reasoning in Text Space

Jianan Zhao, Le Zhuo, Yikang Shen, Meng Qu, Kai Liu, Michael Bronstein, Zhaocheng Zhu, Jian Tang
arXiv 2023   Paper

Large Language Models can Learn Rules

Zhaocheng Zhu, Yuan Xue, Xinyun Chen, Denny Zhou, Jian Tang, Dale Schuurmans, Hanjun Dai
arXiv 2023   Paper / Code

Neural Graph Reasoning: Complex Logical Query Answering Meets Graph Databases

Hongyu Ren*, Mikhail Galkin*, Michael Cochez, Zhaocheng Zhu, Jure Leskovec
arXiv 2023   Paper / Paper List

PEER: A Comprehensive and Multi-Task Benchmark for Protein Sequence Understanding

Minghao Xu*, Zuobai Zhang*, Jiarui Lu, Zhaocheng Zhu, Yangtian Zhang, Chang Ma, Runcheng Liu, Jian Tang
NeurIPS (Datasets and Benchmarks Track) 2022   Paper / Code

Inductive Logical Query Answering in Knowledge Graphs

Mikhail Galkin, Zhaocheng Zhu, Hongyu Ren, Jian Tang
NeurIPS 2022   Paper / Code

Neural-Symbolic Models for Logical Queries on Knowledge Graphs

Zhaocheng Zhu, Mikhail Galkin, Zuobai Zhang, Jian Tang
ICML 2022   Paper / Code

TorchDrug: A Powerful and Flexible Machine Learning Platform for Drug Discovery

Zhaocheng Zhu, Chence Shi, Zuobai Zhang, Shengchao Liu, Minghao Xu, Xinyu Yuan, Yangtian Zhang, Junkun Cheng, Huiyu Cai, Jiarui Lu, Chang Ma, Runcheng Liu, Louis-Pascal Xhonneux, Meng Qu, Jian Tang
arXiv 2022 (65k+ downloads)   Paper / Website / Tutorial / Code

Neural Bellman-Ford Networks: A General Graph Neural Network Framework for Link Prediction

Zhaocheng Zhu, Zuobai Zhang, Louis-Pascal Xhonneux, Jian Tang
NeurIPS 2021
Paper / Code (original) / Code (new) / Code (PyG) / OGB-LSC

KEPLER: A Unified Model for Knowledge Embedding and Pre-trained Language Representation

Xiaozhi Wang, Tianyu Gao, Zhaocheng Zhu, Zhiyuan Liu, Juanzi Li, Jian Tang
TACL 2021   Paper / Code / Dataset

GraphAF: A Flow-based Autoregressive Model for Molecular Graph Generation

Chence Shi*, Minkai Xu*, Zhaocheng Zhu, Weinan Zhang, Ming Zhang, Jian Tang
ICLR 2020   Paper / Code / Tutorial (TorchDrug) / Code (TorchDrug)

Self-Adaptive Network Pruning

Jinting Chen, Zhaocheng Zhu, Cheng Li, Yuming Zhao
ICONIP 2019 (Best Student Paper Finalist)   Paper

GraphVite: A High-Performance CPU-GPU Hybrid System for Node Embedding

Zhaocheng Zhu, Shizhen Xu, Meng Qu, Jian Tang
WWW 2019 (68k+ downloads)   Paper / Website / Tutorial / Code

Saliency Supervision: An Intuitive and Effective Approach for Pain Intensity Regression

Conghui Li, Zhaocheng Zhu, Yuming Zhao
ICONIP 2018   Paper

Context Aware Document Embedding

Zhaocheng Zhu, Junfeng Hu
arXiv 2017   Paper

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